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VMD - Visual Molecular Dynamics

www.ks.uiuc.edu/Research/vmd/

... VMD 1.9.3 (MacOS X, Unix, Windows) GPU-Accelerated Molecular Dynamics Clustering Analysis with OpenACC , Parallel Programming with OpenACC, 2016 QwikMD - Integrative Molecular Dynamics Toolkit for Novices and Experts , Scientific Reports ...


NAMD - Scalable Molecular Dynamics

www.ks.uiuc.edu/Research/namd/

... Resolution Brownian Dynamics MDFF QwikMD Other Outreach   Download NAMD Download VMD Parallel Programming Laboratory   NAMD, recipient of a 2002 Gordon Bell Award and a 2012 Sidney Fernbach Award , is a parallel molecular dynamics code ...


Molecular Dynamics Flexible Fitting

www.ks.uiuc.edu/Research/mdff/

... Other Topics Software Outreach Molecular Dynamics Flexible Fitting Main | Method | Software | Documentation | Publications | Investigators and Collaborators MDFF for cryo-EM The molecular dynamics flexible fitting (MDFF) method can be used ...


2006 Summer School on Computational Materials Science | Materials ...

www.mcc.uiuc.edu/summerschool/2006/

... Dynamics [ Google video ] Ab Initio Multiple Spawning Dynamics [ pdf ] Ab Initio Qua-ntum Molecular Dynamics [ pdf ] Insights for Light-Driven Molecular Devices from Ab Initio Multiple Spawning Excited-State Dynamics of Organic and ...


Research Topics - Steered/Interactive Molecular Dynamics

www.ks.uiuc.edu/Research/Categories/IMD/

Research Topics - Steered/Interactive Molecular Dynamics Research Topics - Steered/In-teractive Molecular Dynamics NIH Center for Macromolecular Modeling & Bioinformatics Un-iversity of Illinois at Urbana-Champaign Home Research Highlights ...


Theoretical and Computational Biophysics Group

www.ks.uiuc.edu/

... with MDFF Driving Biomedical Projects Software VMD - Molecular Graphics Viewer NAMD - Molecular Dynamics Simulator GPU Computing MDFF - Molecular Dynamics Flexible Fitting Lattice Microbes - Cell Simulator BioCoRE - Collaboratory Environme ...


Nigel Goldenfeld's Group: Dynamics and Pattern Formation

guava.physics.uiuc.edu/

Nigel Goldenfeld's Group: Dynamics and Pattern Formation Nigel Goldenfeld's Group               Home People Projects Publications Courses In the news   Apply to join Nigel's group     Welcome to Nigel Goldenfeld's ...


Dynamics

www.ks.uiuc.edu/Research/namd/2.10b1/ug/node35.html

Dynamics Next: Temperature Control and Equilibration Up: Standard Minimization and Dy-namics Previous: Energy Minimization   Contents   Index Subsections Timestep parameters Initialization Conserving momentum Multiple timestep parameters ...


8.4.4 A Step Toward Considering Dynamics

planning.cs.uiuc.edu/node394.html

... Considering Dynamics Next: 8.4.4.1 An acceleration-based control Up: 8.4 Complete Methods for Previous: 8.4.3 Optimal Navigation Functions 8 . 4 . 4 A Step Toward Considering Dynamics If dynamics is an important factor, then the discontinu ...


Constraint Dynamics

femto.cs.uiuc.edu/~sbond/reports/MATH_996/report/node3.html

Constraint Dynamics Next: Discretization Up: Mathematical Formulation Previous: Mathe-matical Formulation Constraint Dynamics Numerous physical systems lead to a Hamiltonian system of ordinary differential equations: (1) (2) where and are the ...


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